PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 886032
Common NameARALYDRAFT_685476
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 268aa    MW: 30868.7 Da    PI: 9.3123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
886032genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.8e-19125213197
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             f+k +++s+v +  +l lp +f+ ++   +ee+++++lede+g+++e  +i r+++    l++GWk+F+ +++L++gD ++F+l++ ++f  ++ vf
  886032 125 FVKSMVRSHVYSCFWLGLPSRFCVDNF--PEETMEIVLEDEEGEEYEAVYIGRRSG----LSGGWKRFALDHKLDDGDALLFQLVEPKRF--KIYVF 213
             89*********************9997..56889****************666665....9**********************9987887..66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-22117214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-23118215IPR015300DNA-binding pseudobarrel domain
CDDcd100177.04E-19123214No hitNo description
PROSITE profilePS5086313.338125216IPR003340B3 DNA binding domain
SMARTSM010195.3E-27125216IPR003340B3 DNA binding domain
PfamPF023621.2E-17125213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAYEEARKLR LQENHKRFQL NFAALPQFQL LQQRNPRPID KALFATAEPR RSSRVRTVIS  60
SYRDDVAVDT GRTSNLRRSR HSSTWATYIS RPLHECKFAS YEEKVGALNA AEKFQSRLKS  120
PHPSFVKSMV RSHVYSCFWL GLPSRFCVDN FPEETMEIVL EDEEGEEYEA VYIGRRSGLS  180
GGWKRFALDH KLDDGDALLF QLVEPKRFKI YVFKGNENAN LTSAGKRGRA TSEEEEEDKD  240
VEESCDDEHS SRATKRPSAR LLRKRKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMap886032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192283e-83AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBankCP0026883e-83CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878355.11e-169putative B3 domain-containing protein At5g58280 isoform X1
SwissprotQ9FHB21e-162Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLD7MPM50.0D7MPM5_ARALL; Predicted protein
STRINGAl_scaffold_0008_22960.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-132B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]