PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 886012
Common NameARALYDRAFT_685456
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 643aa    MW: 71198.8 Da    PI: 5.2043
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
886012genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.4e-29201254155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
   886012 201 KPRVVWSQELHQKFVSAVQQL-GLDKAVPKKILDLMSIEGLTRENVASHLQKYRL 254
              79*******************.********************************8 PP
2Response_reg678.7e-23201271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ l+++l + +y +v+ + ++++alell+e+   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + + +  Ga 
        886012  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESRKALELLRENSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMKGIIHGAC 113
                   799********************.***************999999******************985344..57************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+  +el +
        886012 114 DYLVKPVGLKELQN 127
                   ********999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1831641IPR017053Response regulator B-type, plant
SuperFamilySSF521722.42E-3017135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-3317163No hitNo description
SMARTSM004481.4E-2618129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.5519133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2020127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.85E-1942132No hitNo description
SuperFamilySSF466894.3E-20198258IPR009057Homeodomain-like
PROSITE profilePS5129411.612198257IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-29199259IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25201254IPR006447Myb domain, plants
PfamPF002493.0E-8203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MELGSTEDGR HDKFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES RKALELLREN  60
SNMFDLVISD VEMPDTDGFK LLEIGLEMDL PVIMLSAHSD YDSVMKGIIH GACDYLVKPV  120
GLKELQNIWH HVVKKNIKSY AKNIGPSRQL LPPSESNLVP SASKKRKEKA NDSGDEDDSD  180
REEDDGEGSE QDGDEAGTRK KPRVVWSQEL HQKFVSAVQQ LGLDKAVPKK ILDLMSIEGL  240
TRENVASHLQ KYRLYLKKID EGQQQNMTPD AFGTRDSSYF QMAQLDGLRD FTATRQIPSS  300
GLLSRSHLTK LQPPMYSSIN LQGMNSSSFI QQGHHHNSSN SANPFGTYHT TLSPRIQNVN  360
LFQRTSSPLE TLQFPRSKSY IGDFKGIGDR AVGGSFLDSC MPFGSSSTSL PSASTNTLML  420
QANYTQPLHI SSDGNQPCIE GTPSNSASPN ISFQGLSRFP SHSWQGNLNT TRFPPSSLPL  480
NPAFLPDQVT CAGNNLGDCT SLVSAGNPGG EIQCEPQLLG GFMQNMNPLD GQKWEQQNCT  540
MLNNPFGNIE YPLPADNMVF RDNNATRSKG LDESLMNPID NSQEYVGKAT TMLDPEMKSG  600
KPENDNQHDV FDDLMNEMMK QEENNGMVSV ATRFGFDSFP PP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-23199259363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap886012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866248.10.0two-component response regulator ARR18 isoform X2
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLD7MPK50.0D7MPK5_ARALL; Two-component response regulator
STRINGAl_scaffold_0008_22760.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18