PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 885785
Common NameARALYDRAFT_685229
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 408aa    MW: 45173.8 Da    PI: 10.6361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
885785genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l+ +++q+G+++W++I++  g+ R++k+c++rw +yl
           885785 14 RGQWTPEEDNKLASYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding45.22.1e-1468110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++ E+ ++v+ +  lG++ W++Ia+ ++ gRt++++k++w++
           885785  68 GQFSETEEHIIVKFHSVLGNR-WSLIAAQLP-GRTDNDVKNYWNT 110
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.472965IPR017930Myb domain
SuperFamilySSF466895.99E-2911108IPR009057Homeodomain-like
SMARTSM007173.2E-141363IPR001005SANT/Myb domain
PfamPF002497.4E-181461IPR001005SANT/Myb domain
CDDcd001672.16E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129420.08466116IPR017930Myb domain
SMARTSM007176.4E-1266114IPR001005SANT/Myb domain
PfamPF002496.9E-1368110IPR001005SANT/Myb domain
CDDcd001677.25E-970112No hitNo description
PfamPF026283.0E-76130380IPR003780COX15/CtaA family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006784Biological Processheme a biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donors
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SETEEHIIVK FHSVLGNRWS LIAAQLPGRT DNDVKNYWNT KLKKKLSGMG  120
IDPVTHKPSS HRMWGRGLGI MFALPFSYFL RKGYITLRLG VQLSGLFALG AGQGLIGWWM  180
VKSGLEEPPS EYSQPRVSPY RLAAHLTSAF AIYCGLFWTA LSVVMPEPPA ESLAWVRGAA  240
KVKKLALPVS LIVGITTISG AFVAGNDAGR AFNTFPKMGD TWIPDNIFEM KPLLRNFFEN  300
TATVQLDHRL LATTTLIAIG TMWWFTRKLD IHPAVKALIG STVGMTAVQV TLGVLTLLSY  360
VPVSLGSAHQ AGALTLLTLM LLLNHTLRRP SPSLLKSLPQ VAKSNFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in the biosynthesis of heme A. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap885785
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1174960.0AK117496.1 Arabidopsis thaliana At5g56090 mRNA for unknown protein, complete cds, clone: RAFL17-12-J24.
GenBankBT0049760.0BT004976.1 Arabidopsis thaliana clone U50517 unknown protein (At5g56090) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864431.10.0cytochrome c oxidase assembly protein COX15
SwissprotQ9FKT80.0COX15_ARATH; Cytochrome c oxidase assembly protein COX15
TrEMBLD7ML750.0D7ML75_ARALL; Predicted protein
STRINGAl_scaffold_0008_20490.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.16e-94myb domain protein 103
Publications ? help Back to Top
  1. Lister R, et al.
    A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction.
    Plant Physiol., 2004. 134(2): p. 777-89
    [PMID:14730085]
  2. Welchen E,Gonzalez DH
    Differential expression of the Arabidopsis cytochrome c genes Cytc-1 and Cytc-2. Evidence for the involvement of TCP-domain protein-binding elements in anther- and meristem-specific expression of the Cytc-1 gene.
    Plant Physiol., 2005. 139(1): p. 88-100
    [PMID:16113211]
  3. Vishwakarma A,Tetali SD,Selinski J,Scheibe R,Padmasree K
    Importance of the alternative oxidase (AOX) pathway in regulating cellular redox and ROS homeostasis to optimize photosynthesis during restriction of the cytochrome oxidase pathway in Arabidopsis thaliana.
    Ann. Bot., 2015. 116(4): p. 555-69
    [PMID:26292995]