PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 885286 | ||||||||
Common Name | ARALYDRAFT_684730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 23848.2 Da PI: 10.239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.2 | 1.2e-07 | 29 | 85 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr+ lP + +++K ++ + Av++Ik+ q 885286 29 KLLHRNIERQRRQEMAILFASLRSQLPLKYikaLSSQGKRAMSDHVNGAVNFIKDTQ 85 567999**********************766998888888999**********9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.03E-10 | 24 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.47E-5 | 25 | 89 | No hit | No description |
PROSITE profile | PS50888 | 11.071 | 27 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-6 | 29 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-5 | 29 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MNPSNNPKKT RHQISHMPQE RDETKKEKKL LHRNIERQRR QEMAILFASL RSQLPLKYIK 60 ALSSQGKRAM SDHVNGAVNF IKDTQTRIKD LSSRRDELMR EIGDPTSRTG SGSGSGSSRS 120 EPASVMVQQC VSGFKVVVSS SASSGLEAWP LSRVLEVLHE QGLEVISSLT ARVNERLMYT 180 IQVEVNSFDC FDLAWLQQKL IEELVLSTTR H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 885286 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493789 | 0.0 | AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868384.1 | 1e-129 | transcription factor bHLH120 | ||||
Swissprot | Q9FLI0 | 1e-128 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | D7MRI9 | 1e-154 | D7MRI9_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0008_1550 | 1e-155 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-127 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 885286 |
Entrez Gene | 9300208 |
Publications ? help Back to Top | |||
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