PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 883868
Common NameARALYDRAFT_683312
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 504aa    MW: 56454.3 Da    PI: 4.9723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
883868genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-12337382454
             HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
             +h e+Er RR+++N++f  Lr ++P+ +      K++K + Le Av+YI++L
  883868 337 NHVEAERMRREKLNHRFYALRAVVPNiS------KMDKTSLLEDAVHYINEL 382
             799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-4934228IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.44E-13332383No hitNo description
PROSITE profilePS5088816.463333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17333404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9337382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15337404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MINSDDNLSM IEALFTSDLS PLPPANLSLE TTLPKRLHAV LNGTNEPWTY VIFWKPSYDY  60
DISGESVLKW SDGVYNGGDE EKTRERLRRK KTIPSSPAER ERRSNVLREL NSMISGEAFP  120
VVEDEYVNKD DDVEAEVTDM EWFFLVSMTW SFGSGSGLAG KAFASYNPVW VTGSDQIYGS  180
GCDRAKQGGD LGLQTIVCIP SDNGVLELGS TEHIQQNSDL FNRIRFLFNF DGSKDFPGAP  240
NLNSELFSFQ LETGFSSTVT DNPNPSYNLN FSTSCSTSAR ASCGDVLSFS DIVKQSSENL  300
NPNTYSDQIQ NATVMPEKKQ GKKRGRKPAH GRDQPLNHVE AERMRREKLN HRFYALRAVV  360
PNISKMDKTS LLEDAVHYIN ELKSKAENAE SEKNAIQIQL NELKEMAGQR NAIPSVFKYE  420
ENASEMKIEV KIMGNDAMVR VESSKSHHPG ARLMNALMDL ELEVNNASMS VMNDFMIQQA  480
NVKMGLRIYK QEELRDVLIS KIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-47302316195Transcription factor MYC3
4rqw_B1e-47302316195Transcription factor MYC3
4rs9_A1e-47302316195Transcription factor MYC3
4yz6_A1e-47302316195Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap883868
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0222210.0AB022221.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSD23.
GenBankAB4937810.0AB493781.1 Arabidopsis thaliana At5g46830 mRNA for hypothetical protein, partial cds, clone: RAAt5g46830.
GenBankAF2526360.0AF252636.1 Arabidopsis thaliana putative transcription factor bHLH28 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865159.20.0transcription factor bHLH28
SwissprotQ9LUK70.0BH028_ARATH; Transcription factor bHLH28
TrEMBLD7MQN90.0D7MQN9_ARALL; Predicted protein
STRINGAl_scaffold_0008_1320.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.10.0NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]