PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 882577 | ||||||||
Common Name | ARALYDRAFT_682021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24745.8 Da PI: 7.9639 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00077 | 88 | 120 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++l+ + +K + a++L +++ YIk Lq 882577 88 ERITALQQLVSPY-----GKTDTASVLHETMGYIKFLQ 120 6788899999888.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.287 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-11 | 74 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-7 | 85 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRGTTEEEDG FTSFSDVLML FDDVLSSGDV GEDGFGFTGN ETSQMKKRIS SGDEHDRVCD 60 PKPGKRCKRD QTKSSVGNAK VKKEKVGERI TALQQLVSPY GKTDTASVLH ETMGYIKFLQ 120 DQVQVLSTPY FKHNPLVRRR RHRRSKPDDE SERVEKQWFM SCSTSLDRTR NGVDLWSSAI 180 YLVTSHTKSE PVETVEVKSY KDKLFDAYKY FCLSVDT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 882577 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079674 | 9e-52 | AC079674.4 Arabidopsis thaliana chromosome 1 BAC F10F5 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 9e-52 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866746.1 | 1e-115 | LOW QUALITY PROTEIN: transcription factor bHLH113 | ||||
Swissprot | Q9LT67 | 1e-34 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | D7KF27 | 1e-159 | D7KF27_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_4344 | 1e-160 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7402 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 7e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 882577 |
Entrez Gene | 9327598 |
Publications ? help Back to Top | |||
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