PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 878368 | ||||||||
Common Name | ARALYDRAFT_677812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 22713.1 Da PI: 6.232 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98 | 1.4e-30 | 5 | 136 | 6 | 127 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107 F+P +eel+++yL++k+++++ + + i+ev+i+++eP dLp +k e++ wyf s+ +k + +r++ra ++g Wk tg+++++++ +g+ +glkk Lv 878368 5 TFNPPEEELINYYLNNKITENDDLVGRQITEVNICHHEPADLPGLAKIESShTWYFISPVEK-FGKLNRTKRASRTGHWKITGNSRTIKDVDGNPIGLKKFLV 106 7*********************888788***************6444444526777766655.67889*********************************** PP NAM 108 fy..........kgrapkgektdWvmheyr 127 f + ++ + +kt+W++he++ 878368 107 FQenkrssssssSTTTTQQQKTNWIIHEFH 136 **666555544435566667*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.949 | 1 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-18 | 4 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-33 | 6 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MYRCTFNPPE EELINYYLNN KITENDDLVG RQITEVNICH HEPADLPGLA KIESSHTWYF 60 ISPVEKFGKL NRTKRASRTG HWKITGNSRT IKDVDGNPIG LKKFLVFQEN KRSSSSSSST 120 TTTQQQKTNW IIHEFHSFLH HPNKMLTENK NEDYGGDYCN GLDELLPSLE QGESSGLLLG 180 ENGHAYEQDT TENSNVRPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-13 | 6 | 154 | 23 | 157 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-13 | 6 | 154 | 23 | 157 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-13 | 6 | 154 | 23 | 157 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-13 | 6 | 154 | 23 | 157 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-13 | 6 | 154 | 26 | 160 | NAC domain-containing protein 19 |
3swm_B | 3e-13 | 6 | 154 | 26 | 160 | NAC domain-containing protein 19 |
3swm_C | 3e-13 | 6 | 154 | 26 | 160 | NAC domain-containing protein 19 |
3swm_D | 3e-13 | 6 | 154 | 26 | 160 | NAC domain-containing protein 19 |
3swp_A | 3e-13 | 6 | 154 | 26 | 160 | NAC domain-containing protein 19 |
3swp_B | 3e-13 | 6 | 154 | 26 | 160 | NAC domain-containing protein 19 |
3swp_C | 3e-13 | 6 | 154 | 26 | 160 | NAC domain-containing protein 19 |
3swp_D | 3e-13 | 6 | 154 | 26 | 160 | NAC domain-containing protein 19 |
4dul_A | 3e-13 | 6 | 154 | 23 | 157 | NAC domain-containing protein 19 |
4dul_B | 3e-13 | 6 | 154 | 23 | 157 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 878368 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC022287 | 1e-135 | AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-135 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889393.1 | 1e-148 | NAC domain-containing protein 69 | ||||
TrEMBL | D7KB61 | 1e-147 | D7KB61_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_135 | 1e-148 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14815 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04430.1 | 1e-111 | NAC domain containing protein 49 |
Link Out ? help Back to Top | |
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Phytozome | 878368 |
Entrez Gene | 9328153 |