PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 875173 | ||||||||
Common Name | ARALYDRAFT_674617 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 128aa MW: 15219.9 Da PI: 10.8114 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 52.8 | 1.1e-16 | 17 | 109 | 2 | 100 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST.T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 F ++ly++++d++ +++isws++++sfv+ ++++f ++ +++ F s f+ F+ L+ YgF+++k++++ eF +++F +g+ l++++ 875173 17 FYERLYKLVDDPSSDSIISWSKKSKSFVIRNQKKFIRRKIHSRFPfSSTFEKFISMLKYYGFSEMKRSDGL-------LEFGNENFVRGQPMLMKEM 106 899********************************999999999735789*******************87.......*************999998 PP XXX CS HSF_DNA-bind 98 krk 100 + k 875173 107 HLK 109 766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.1E-21 | 13 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.2E-21 | 14 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.96E-20 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.2E-6 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.7E-17 | 17 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-6 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence Send to blast |
MQVLGRSELS DYPLPVFYER LYKLVDDPSS DSIISWSKKS KSFVIRNQKK FIRRKIHSRF 60 PFSSTFEKFI SMLKYYGFSE MKRSDGLLEF GNENFVRGQP MLMKEMHLKA MMKRINKDLT 120 VFKAQRR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 875173 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002886167.1 | 1e-88 | heat stress transcription factor A-4a | ||||
TrEMBL | D7LBB5 | 3e-87 | D7LBB5_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_3814 | 5e-88 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G19630.1 | 1e-16 | HSF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 875173 |
Entrez Gene | 9320197 |