PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 873720
Common NameARALYDRAFT_673164
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 346aa    MW: 38985.1 Da    PI: 7.8426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
873720genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-072362731355
             HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             R++i +++  L +l+P+       K+s a+iLe+  +YIk Lq
  873720 236 RKKISDKIRSLEKLMPWE-----NKMSLAMILEESHRYIKFLQ 273
             89***************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.623223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-8236280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-5236273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-10236279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-4236277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAQIRKSEFV SLPDKNPCPW DQYHLILKTI QRSRFNQYNT LKPPDEGRAT NSRQKHITES  60
SSFLVSPPSL HHPITKRHSE KMETEFDSLT ELPPLPPSDF TPSSFTFSDH QLDLSLSHAD  120
SLFLDSTLSL LNRHHLTEST RLEHLFYDST QLFQNDLATT TTPFLHLPNL TSIEQPPAVE  180
EEPTTMKLFP SLSPPLPLPD AKRRKKLNSY SSSTNSGSPT ASSSNTNDGG TGITKRKKIS  240
DKIRSLEKLM PWENKMSLAM ILEESHRYIK FLQSQIASLS WMPLESVYNT AGEVGESDLL  300
KSLTRQQILQ VIANSPGSRN VLSSHGVCLF SYEQLLSLKT MSRNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMap873720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0286229e-56AB028622.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MZN24.
GenBankCP0026869e-56CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886186.10.0transcription factor bHLH117
SwissprotQ9LRJ41e-120BH117_ARATH; Transcription factor bHLH117
TrEMBLD7L1K30.0D7L1K3_ARALL; Predicted protein
STRINGAl_scaffold_0003_23610.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.18e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]