PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 873583 | ||||||||
Common Name | ARALYDRAFT_673027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 214aa MW: 23511.4 Da PI: 8.3645 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.5 | 8.8e-19 | 164 | 200 | 1 | 35 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++ 873583 164 CTnmNCNALNTPMWRRGPLGPKSLCNACGIKFRKEEE 200 55559*****************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.9E-10 | 160 | 209 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-16 | 164 | 200 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.14E-10 | 167 | 200 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-12 | 167 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.358 | 168 | 196 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.03E-10 | 168 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MEQELDLTLK LGLPNSTVDT HLSLNLSTTT TNQGDNNNDG GEVLNYRRAL WGNDEVIHNE 60 AARNNVEFNI RIYNYVFQQL AGAPNTLNFA PYPMPSPAPA PAPAPAPETP PASDEYVLID 120 VPARRVRRNN SQTMANTWNE NATAKRLRGC GGSCGGRIEG MKKCTNMNCN ALNTPMWRRG 180 PLGPKSLCNA CGIKFRKEEE RKAKRNGVIE LDN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 873583 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493625 | 0.0 | AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886305.1 | 1e-122 | GATA transcription factor 29 | ||||
Swissprot | Q9LT45 | 3e-94 | GAT29_ARATH; GATA transcription factor 29 | ||||
TrEMBL | D7KZW1 | 1e-156 | D7KZW1_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_2224 | 1e-156 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10652 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20750.1 | 8e-82 | GATA transcription factor 29 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 873583 |
Entrez Gene | 9321468 |
Publications ? help Back to Top | |||
---|---|---|---|
|