PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 871269 | ||||||||
Common Name | ARALYDRAFT_670713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 338aa MW: 37919.2 Da PI: 8.2296 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.6 | 2.7e-33 | 171 | 227 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h 871269 171 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 227 8******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 5.6E-120 | 1 | 337 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 155 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 162 | 228 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.963 | 165 | 230 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-38 | 170 | 229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-26 | 171 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEFTDFSKTS FYYPSSQSVW DLGDLAAAER NSLGFMELLG SQHHDFATVS PHSSLLETPQ 60 QQTQPSAKLS SSILQAPPSE QLVTSKVEPL CSDHLLANPP ATPNSSSISS ASSEALNEEK 120 PKREGNEEEK SHTKKQMFWR KNRLKPKKNN QKRQREARVA FMTKSEVDHL EDGYRWRKYG 180 QKAVKNSPFP RSYYRCTTAS CNVKKRVERS FRDPSTVVTT YEGQHTHISP LTSRPISTGG 240 FFGSSGAASN LGNGCFGFPI DGSTLITPQF QQLVHYHQQQ QQQQQQELMS CFGGVGEYLN 300 SHANEYDDDH RVKKSQVLVK DNGLLQDVVP SHMLKEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-27 | 160 | 230 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-27 | 160 | 230 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 871269 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117918 | 0.0 | AK117918.1 Arabidopsis thaliana At2g47260 mRNA for putative WRKY-type DNA binding protein, complete cds, clone: RAFL19-10-C13. | |||
GenBank | AY052647 | 0.0 | AY052647.1 Arabidopsis thaliana WRKY transcription factor 23 (WRKY23) mRNA, complete cds. | |||
GenBank | BT006238 | 0.0 | BT006238.1 Arabidopsis thaliana At2g47260 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885622.1 | 0.0 | probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 0.0 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | D7LGL4 | 0.0 | D7LGL4_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0004_3432 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6152 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 1e-158 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | 871269 |
Entrez Gene | 9316359 |
Publications ? help Back to Top | |||
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