PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 868378 | ||||||||
Common Name | ARALYDRAFT_667822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25591.7 Da PI: 10.1077 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.8 | 1.1e-21 | 32 | 74 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i+fs+ k 868378 32 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 74 8999***********************************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.591 | 22 | 82 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-30 | 22 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.99E-34 | 23 | 98 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-28 | 23 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-17 | 24 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-25 | 31 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-17 | 44 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-17 | 59 | 80 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MYKKQLRTRH NKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC 60 GAEIGIIVFS PAKKPFSFGH PSVESVLDRY MSRNNMSLVQ TQQPQGSPAA SCELNMQLTH 120 ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNL VQLQEMKYAL EELRKTVVTN 180 MASFNEAKDD VFGFLDNKVT APPYMNMSSG LSSIYYANGN GCF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-15 | 22 | 101 | 1 | 87 | MEF2 CHIMERA |
6byy_B | 2e-15 | 22 | 101 | 1 | 87 | MEF2 CHIMERA |
6byy_C | 2e-15 | 22 | 101 | 1 | 87 | MEF2 CHIMERA |
6byy_D | 2e-15 | 22 | 101 | 1 | 87 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 868378 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC006585 | 0.0 | AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ056542 | 0.0 | DQ056542.1 Arabidopsis thaliana MADS-box family protein (At2g24840) mRNA, complete cds. | |||
GenBank | EU836691 | 0.0 | EU836691.1 Arabidopsis thaliana MADS box protein AGL61 (AGL61) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883034.1 | 1e-157 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-143 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7LJG1 | 1e-166 | D7LJG1_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0004_541 | 1e-167 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-145 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 868378 |
Entrez Gene | 9314872 |
Publications ? help Back to Top | |||
---|---|---|---|
|