PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 867069
Common NameARALYDRAFT_666513
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 269aa    MW: 30503.3 Da    PI: 6.175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
867069genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.65.3e-28134194259
             --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
             dD y+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r +edp+++ itY+++H+++
  867069 134 DDNYTWRKYGQKEILGSRFPRAYYRCTHQklyKCPAKKQVQRLDEDPHTFRITYRSSHTCH 194
             8****************************9999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27124195IPR003657WRKY domain
SuperFamilySSF1182908.76E-25132194IPR003657WRKY domain
SMARTSM007743.5E-35133195IPR003657WRKY domain
PROSITE profilePS5081120.036134191IPR003657WRKY domain
PfamPF031068.9E-25134194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEEIMSMIFN GINLVKELEF SLSSQESPES DLSSYLSSIS TLFGDANERL KILLAWRNSL  60
AQYQPEPEPV PMFDIPMQND QSLMQDHWFN FRYPVMQTVE GNATSRPRHQ RRKKDIGEEE  120
TVLAAVERIE IPPDDNYTWR KYGQKEILGS RFPRAYYRCT HQKLYKCPAK KQVQRLDEDP  180
HTFRITYRSS HTCHSFTTSP ISSLAPATAT TANVPDVANM AEAMFGNMDS VVPLGKPCFN  240
HHCLVPGDDG DGEGTHGTHL RRDTTCPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19134193968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap867069
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0769078e-99AB076907.1 Arabidopsis thaliana IRK gene for inflorescence and root apices receptor-like kinase, complete cds.
GenBankAL1639728e-99AL163972.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T5P19.
GenBankCP0026868e-99CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankDQ4467688e-99DQ446768.1 Arabidopsis thaliana clone pENTR221-At3g56390 hypothetical protein (At3g56390) mRNA, complete cds.
GenBankDQ6531538e-99DQ653153.1 Arabidopsis thaliana clone 0000010596_0000007714 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876365.10.0WRKY transcription factor 55
SwissprotQ9SHB59e-71WRK55_ARATH; WRKY transcription factor 55
TrEMBLD7LVF40.0D7LVF4_ARALL; Predicted protein
STRINGAl_scaffold_0005_25480.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-65WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]