PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 864421 | ||||||||
Common Name | ARALYDRAFT_663865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 429aa MW: 48338.1 Da PI: 6.1097 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.4e-13 | 248 | 293 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++Pk +++Ka+ L Av YI sL 864421 248 SHVEAERQRREKLNHRFYALRAIVPKV-----SRMDKASLLSDAVSYIESL 293 799***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.0E-29 | 34 | 188 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.507 | 244 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.10E-12 | 247 | 297 | No hit | No description |
Pfam | PF00010 | 1.2E-10 | 248 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-17 | 248 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-17 | 248 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-15 | 250 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MYNLTFSPSL SSSPLSFTQQ TPAIVSSSPA DLALQQKLRF VVETSPDRWA YIIFWHKMFD 60 EPSNRSYLVW VDGHFCGNKN NKSQENYTTN SIECELMMDG GDDLELFYAT SFYSEDGSPR 120 KEIFDESLVW LTGLDELRFS NYERAKEAGF HGVHTLVSIP INNGIIELGS SDSIIQNRNF 180 INRVQSIFGS GKTPEHTNQT GSDPKPAESD HSEIGNRQSG SERKRRRKLE TMDVAVAAEE 240 KHHPPVLSHV EAERQRREKL NHRFYALRAI VPKVSRMDKA SLLSDAVSYI ESLKSKIDDL 300 ETEIKKLKTK MTETDKLDNN SSNTSPFSVE YQINQKPSES NRVSDLEVQV KVVGYEAIIR 360 VQTENVNHPT SALMSALMEM DCRVQHANAS RLSQVVVQDV VVLVPEGLRS EDGLRTTLSR 420 NLRSLSSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-22 | 247 | 314 | 7 | 74 | Transcription factor MYC2 |
5gnj_B | 3e-22 | 247 | 314 | 7 | 74 | Transcription factor MYC2 |
5gnj_E | 3e-22 | 247 | 314 | 7 | 74 | Transcription factor MYC2 |
5gnj_F | 3e-22 | 247 | 314 | 7 | 74 | Transcription factor MYC2 |
5gnj_G | 3e-22 | 247 | 314 | 7 | 74 | Transcription factor MYC2 |
5gnj_I | 3e-22 | 247 | 314 | 7 | 74 | Transcription factor MYC2 |
5gnj_M | 3e-22 | 247 | 314 | 7 | 74 | Transcription factor MYC2 |
5gnj_N | 3e-22 | 247 | 314 | 7 | 74 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 228 | ERKRRRKL |
2 | 222 | 226 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 864421 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ519812 | 0.0 | AJ519812.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002872924.1 | 0.0 | transcription factor bHLH14 | ||||
Swissprot | O23090 | 0.0 | BH014_ARATH; Transcription factor bHLH14 | ||||
TrEMBL | D7M5J6 | 0.0 | D7M5J6_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0006_3930 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3039 | 21 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 864421 |
Entrez Gene | 9311078 |
Publications ? help Back to Top | |||
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