PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

864079

Common Name

ARALYDRAFT_663523

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 301aa MW: 33759.4 Da PI: 4.3025

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
864079	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.8	1.4e-06	176	214	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +AveYIk Lq 864079 176 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 214 677888999*****998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.277	164	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	174	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.30E-8	174	217	No hit	No description
SMART	SM00353	6.6E-4	175	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-10	178	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MTEEFEIAGI STGAWWSSPT NTATVFSGYS LPRSTEISLD VTNFGWQNFD NKINDPNDGF 60 INMHNSFFEG LFDPNEQLLP DSWPKSTVPN AKSELLESFP FLDNMFLIDT EAESFLDHEI 120 RNHNSKEQTT QDCKNFTSKG SERTEELEEN SDEYSPRLLK RQRLETLSPL PSFKVRKEKL 180 GDRITALQQL VSPFGKTDTA SVLNEAVEYI KFLQEQVTVL SNPDQNTIGS VQQQQCSDKK 240 SMNTQEEEEE EEECSPRKHV DLASRGLCLM PISASYPVAA AAASAAEMNL HLISGIFHSV 300 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	864079

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT015446	0.0	BT015446.1 Arabidopsis thaliana At4g05170 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874835.2	0.0	LOW QUALITY PROTEIN: transcription factor bHLH114
Swissprot	Q9M0X8	1e-179	BH114_ARATH; Transcription factor bHLH114
TrEMBL	D7M1Y9	0.0	D7M1Y9_ARALL; Predicted protein
STRING	Al_scaffold_0006_3588	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14428	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	1e-133	bHLH family protein

Link Out ? help Back to Top
Phytozome	864079
Entrez Gene	9308808

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]