PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 859566
Common NameARALYDRAFT_659010
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 283aa    MW: 31935.4 Da    PI: 9.453
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
859566genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.3e-1326951694
            EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3 16 lvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
            + +pk f +++  g ++ +     l++  s  +W++k+  ++++    +tkGW+eF+  ++L++gD++vF+++g+    l++
  859566 26 ILIPKAFYSKYleGRQEGN--AAELRSdASEITWNIKI--DGRR----MTKGWEEFAVGHNLQVGDILVFRHEGN----LLF 95
            789********96555444..5666554999*******..9998....9**********************7663....333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-187105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-187105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.43411103IPR003340B3 DNA binding domain
CDDcd100177.39E-1512100No hitNo description
SMARTSM010194.9E-1614103IPR003340B3 DNA binding domain
PfamPF023622.4E-92694IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-4142198IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.42145234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MANSMFSSSA KPHFLKPILP GFKTYILIPK AFYSKYLEGR QEGNAAELRS DASEITWNIK  60
IDGRRMTKGW EEFAVGHNLQ VGDILVFRHE GNLLFHVTPF GLSCCEILYS QNDEKVVKDK  120
TGKVTRYKTV KKTAKNECSS VDTDFVVPVT ASNQRLDSFY LPRGFTTSSG LSKLCNEIIL  180
MDEKSRPSTL KLCYHKSRKP PVLRIYPLER DEDNIGNHSK KIKQEVEHET VKEETNVESG  240
KLKRDGLLKK DPQKVCSSSH DTIFVVPGTA SNQRNDSFVR SP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap859566
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0464321e-114AB046432.1 Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F22D12.
GenBankCP0026881e-114CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF18O91e-114AF296831.1 Arabidopsis thaliana BAC F18O9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874112.10.0LOW QUALITY PROTEIN: B3 domain-containing protein REM-like 3
SwissprotF4KFT61e-163REML3_ARATH; B3 domain-containing protein REM-like 3
TrEMBLD7MHL10.0D7MHL1_ARALL; Predicted protein
STRINGAl_scaffold_0007_30650.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17423910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.11e-156B3 family protein