PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 856770
Common NameARALYDRAFT_656214
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRF
Protein Properties Length: 541aa    MW: 59040.2 Da    PI: 9.0414
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
856770genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.5e-25227270144
     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
             d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  856770 227 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 270
             79***************************************998 PP
2QLQ53.95.5e-19163199137
     QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
             ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll  i+k
  856770 163 GPFTLTQWAELEHQALIYKYITANVPVPSSLLISIKK 199
             59******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-11163199IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.598164199IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.8E-13164197IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.77227271IPR014977WRC domain
PfamPF088793.5E-21228270IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDIGVHVLGS VTSNENESLG LKELRGTKQD RSGFNGEDCL QRSLKLARTT TTKEEEENLS  60
SSSAAAYCKT MSFQQGIPLM RSASPLSSDS RRQEQMLSFS DKPEALDFSK YVGLDNSSNN  120
KSSPSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEHQALIY  180
KYITANVPVP SSLLISIKKS FYPYGSLPPS SFGWGTFHLG FAGSNMDPEP GRCRRTDGKK  240
WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVATPQ QPVITGNTNR  300
SNARASSNRS LAIGSQYINP STDSLPNNRG VSIYPSTVSL QPKESPVIQQ KHRNNNNNNN  360
PFEFGHISSD SLLNPNSAKT YGSSYLDFSS NQDKHSVNHN HNSWPEELKS DWTQLSMSIP  420
IASSSPSSAH NNNNTGQDTT TLSPLRLSRE LDLSIQTEET TLEPAVKKVN TWIPISWGNS  480
LGGPLGEVLN STTNSPTLGS SPTGVLQKST FCSLSNNSSV SSPIAENNNR NNGDYFHYTT  540
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap856770
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1764320.0AK176432.1 Arabidopsis thaliana mRNA for transcription activator (GRL2), complete cds, clone: RAFL24-18-E23.
GenBankAY1026350.0AY102635.1 Arabidopsis thaliana transcription activator (GRF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195488.20.0growth-regulating factor 2
RefseqXP_020875498.10.0growth-regulating factor 2
SwissprotQ8L8A80.0GRF2_ARATH; Growth-regulating factor 2
TrEMBLD7MA090.0D7MA09_ARALL; Predicted protein
STRINGAl_scaffold_0007_2690.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.10.0growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]