PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 856734 | ||||||||
Common Name | ARALYDRAFT_656178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 24667.4 Da PI: 10.7792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.1 | 3.8e-14 | 63 | 109 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riNs f++Lr++lP++ K +Ka++L ++v+Y ++L 856734 63 KKHSDAERRRRLRINSQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 109 68*************************9.....7**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-13 | 51 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.237 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.93E-11 | 63 | 114 | No hit | No description |
Pfam | PF00010 | 6.5E-12 | 63 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-14 | 64 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-13 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVSLHHLEQG MRPISRCYNP TVYSTTIGGN FLAGAATSSK LFSRGFSVTK PKSKSESKEV 60 AAKKHSDAER RRRLRINSQF ATLRTILPNL VKQDKASVLG ETVRYFNELK KMVQDIPTTP 120 SLEDSMRLGH CNNNRDLARV VFSCSDRDGL MSEVAESMKA VKAKAVRAEI MTVGGRTKCA 180 LFVHGVNGNE GLVKLKKSLK PVVNGKSSSE AKNNNIGGSL LTQQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 856734 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ577587 | 0.0 | AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874989.1 | 1e-154 | LOW QUALITY PROTEIN: transcription factor bHLH131 | ||||
Swissprot | P0CB25 | 1e-141 | BH131_ARATH; Transcription factor bHLH131 | ||||
TrEMBL | D7M9K5 | 1e-165 | D7M9K5_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0007_233 | 1e-166 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13939 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 1e-117 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 856734 |
Entrez Gene | 9305019 |