PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 856135 | ||||||||
Common Name | ARALYDRAFT_655509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 142aa MW: 16283.3 Da PI: 5.7452 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.7e-16 | 40 | 114 | 13 | 96 |
TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +p f+++h +gk+ ++kt+ l++ s ++W vk+ ++ lt+GW++F+ +++L+ gD+vvF+++g++ f +v++ 856135 40 H---NIPVAFFSKHvEGKNDQNKTVNLRSdASEKTWLVKM--DGLN----LTDGWEDFAFSHDLRIGDIVVFRHEGEMVF--HVTA 114 4...49*********8888899******97888*******..5555....***********************9998888..6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 12 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.16E-13 | 13 | 113 | No hit | No description |
PROSITE profile | PS50863 | 11.66 | 25 | 118 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-17 | 29 | 118 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.42E-17 | 30 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-10 | 39 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MADQSLLHSP IKPHFFKPLL EGFRTHLVLC STLFSYISEH NIPVAFFSKH VEGKNDQNKT 60 VNLRSDASEK TWLVKMDGLN LTDGWEDFAF SHDLRIGDIV VFRHEGEMVF HVTALGPSCC 120 EIQYYTSSHN INDDDRNDQT NI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 856135 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006535 | 1e-108 | AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence. | |||
GenBank | BT002947 | 1e-108 | BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-108 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020875226.1 | 1e-90 | B3 domain-containing protein REM17, partial | ||||
Swissprot | Q84WP3 | 2e-72 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | D7MVQ9 | 1e-102 | D7MVQ9_ARALL; Predicted protein (Fragment) | ||||
STRING | Al_scaffold_0022_1 | 1e-103 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 7e-75 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 856135 |
Entrez Gene | 9299184 |
Publications ? help Back to Top | |||
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