PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 497421 | ||||||||
Common Name | ARALYDRAFT_497421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21906.2 Da PI: 8.6655 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.7e-13 | 3 | 34 | 14 | 47 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++++G++ W+tIar ++ gRt++++k++w+++ 497421 3 ELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 34 799******.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.033 | 1 | 39 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0011 | 2 | 37 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.96E-9 | 2 | 35 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-15 | 3 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-10 | 3 | 34 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.08E-10 | 3 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
RFELHAKWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKTK SPTNNAEKTK NRILKRQQFQ 60 QQRQMELQQE QQLLQFNQID MKKIMSLLDD DNNNNGDNNT FSSSSSGSSG EGGAFYVPHQ 120 ITHSTTTSGC DPNSNGYYPV VPVTMPEANV NEDNAIWDNL WNVDFEGQGS FGGAACAPRK 180 QYFQNMVIPF Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 497421 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF062904 | 0.0 | AF062904.1 Arabidopsis thaliana putative transcription factor (MYB71) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002862506.2 | 1e-142 | transcription factor MYB78, partial | ||||
TrEMBL | D7MXG8 | 1e-142 | D7MXG8_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.397__1__AT3G24310.1 | 1e-143 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 3e-90 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | 497421 |
Entrez Gene | 9298583 |