PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

497417

Common Name

ARALYDRAFT_497417

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 248aa MW: 28834 Da PI: 9.3319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
497417	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.7e-10	87	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+r h Er RR++ ++++ L +llP a +K++K +i+ekAv+ I +Lq 497417 87 RCRRHMLKERTRREKQKQSYLALHSLLPFA-----TKNDKNSIVEKAVDEIGKLQ 136 6788999*********************.....9*************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.2E-11	80	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.45E-9	84	140	No hit	No description
PROSITE profile	PS50888	12.76	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-7	87	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-7	90	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-5	92	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDNFFLDLVC QEDDNFWDLI GDISGNDDKS VSVPNRSAFR SYVKGTEHLL MSPGTTSSKV 60 NVKKRMVNLL RKNWEEKKNA VAPEKERCRR HMLKERTRRE KQKQSYLALH SLLPFATKND 120 KNSIVEKAVD EIGKLQRLKK ELEKRIKVIE EKSAKDDPDN MSETKVRFNL QEPLSGLDSM 180 LEVLHYLKSM GTKLKTVHAN FSPQEFSATM NIETQIRGEE VEKRVERRLQ ENEWKLLFLP 240 EASCYKD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	497417

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065390	0.0	AY065390.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.
GenBank	AY096718	0.0	AY096718.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868383.1	0.0	transcription factor bHLH92
Swissprot	Q9FIX5	1e-152	BH092_ARATH; Transcription factor bHLH92
TrEMBL	D7MXG4	0.0	D7MXG4_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.390__1__AT5G43650.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-130	bHLH family protein

Link Out ? help Back to Top
Phytozome	497417
Entrez Gene	9298587

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]