PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496976
Common NameARALYDRAFT_496976
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 289aa    MW: 33670.9 Da    PI: 6.7921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496976genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.56.4e-54111372127
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
             ppGfrFhPtdeelv +yLkkkv++++++l +vi+e+d+yk+ePwdL++     ++e+kewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v+  +++l+g
  496976  11 PPGFRFHPTDEELVGYYLKKKVASQRIDL-DVIREIDLYKIEPWDLQErcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVYL-NSKLIG 111
             9****************************.9***************953432234677**************************************.999*** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyr 127
             ++ktLvfy+grap+g+k+dW++hey 
  496976 112 MRKTLVFYRGRAPNGQKSDWIIHEYY 137
             ************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-596160IPR003441NAC domain
PROSITE profilePS5100557.17210160IPR003441NAC domain
PfamPF023651.3E-2611136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKVDQESCSI PPGFRFHPTD EELVGYYLKK KVASQRIDLD VIREIDLYKI EPWDLQERCR  60
IGYEEQKEWY FFSHKDKKYP TGTRTNRATV AGFWKATGRD KAVYLNSKLI GMRKTLVFYR  120
GRAPNGQKSD WIIHEYYSLE SHQNSPPLEE GWVVCRAFKK RTNVPTKRRQ LWDSNCFFYD  180
ASTLLEPLDK RARHNPDFVG TPFKQELLSE ANHIEDGDFG SMYLQSMDDD QLYQLPQLES  240
PSLPSEITPQ ISENSSRKDN VSAEKRITDW RSLDKFVASQ LLMSSGED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-49516210170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00590DAPTransfer from AT5G66300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap496976
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0158240.0BT015824.1 Arabidopsis thaliana At5g66300 gene, complete cds.
GenBankBT0202160.0BT020216.1 Arabidopsis thaliana At5g66300 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865078.20.0NAC domain-containing protein 105 isoform X2
SwissprotQ9FH590.0NC105_ARATH; NAC domain-containing protein 105
TrEMBLD7MMZ10.0D7MMZ1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__2792__AT5G66300.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151341619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.10.0NAC domain containing protein 105
Publications ? help Back to Top
  1. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]