PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496902

Common Name

ARALYDRAFT_496902

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 333aa MW: 38475.9 Da PI: 6.5812

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496902	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.7e-19	12	105	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv+ ++s+ lv+p f+ ++ ++ke +k+ l de gr W v+ + + + +r ++++kGW++F++++ L+ gDf+vF++dg+s+f v++f 496902 12 FFKVF--LPEFSSHELVIPPAFI-DI-LDKELPKEAFLVDEIGRLWCVETKTEDTEERfcVLFKKGWESFANDQSLEFGDFLVFRYDGDSRF--SVTIFA 105 88999..889999********.66.457899*************887777778999************************9999..888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.888	10	107	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.7E-22	11	109	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-21	11	109	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.6E-17	12	105	IPR003340	B3 DNA binding domain
CDD	cd10017	1.37E-17	12	104	No hit	No description
SMART	SM01019	1.5E-20	12	107	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.4E-14	213	313	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.22E-14	214	302	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.066	218	317	IPR003340	B3 DNA binding domain
CDD	cd10017	1.32E-7	219	313	No hit	No description
SMART	SM01019	4.5E-10	221	317	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MVEETAGKDL EFFKVFLPEF SSHELVIPPA FIDILDKELP KEAFLVDEIG RLWCVETKTE 60 DTEERFCVLF KKGWESFAND QSLEFGDFLV FRYDGDSRFS VTIFAKDGCK KDIGVVTTTD 120 RSRVSVDEKE PVDISTEPEL RKDCGHRINQ KRKRDSVNED PRVMVNNKPD YVSTNKTKPE 180 HREKTQRTVN RAGDPCDISW CPEKEHNGFE ESVYKPKHPH FLRNITIASL QKLEIPLTFL 240 RSNGIELEEE VGLCDENGKK WPLKIVNHGR GVKFSHESWL CFCKSHNMML THKCLFEFIV 300 PSNGRCNEIQ VRIVSGRLPT TMTRHKYQVL AM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496902

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-172	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	1e-172	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866723.1	0.0	putative B3 domain-containing protein At5g66980
Swissprot	Q9FGD2	0.0	Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBL	D7MLD4	0.0	D7MLD4_ARALL; Transcriptional factor B3 family protein
STRING	fgenesh2_kg.8__2718__AT5G66980.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12802	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	0.0	B3 family protein

Link Out ? help Back to Top
Phytozome	496902
Entrez Gene	9302795

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]