PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 496889 | ||||||||
Common Name | ARALYDRAFT_496889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 22762.9 Da PI: 9.9856 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.3 | 2.1e-16 | 93 | 139 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L++l+P++ K +Ka++L +A+eY+k+Lq 496889 93 FHNLSEKRRRSKINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 139 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.111 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-14 | 93 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-19 | 93 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-20 | 93 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-16 | 94 | 143 | No hit | No description |
SMART | SM00353 | 3.1E-18 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGDSDVGDRL PPPSSSDELS SFLRQILSRT PTAQPSSPPK RNVSSAETFF PSVSGGAVSI 60 AGYGVAQEKY AFENKRNGAK QRNSLKRTID AQFHNLSEKR RRSKINEKMK ALQKLIPNSN 120 KTDKASMLDE AIEYLKQLQL QVQTLAVMNG LGLNPMRLPP VLPPTHTRIN ETLEQDMNLE 180 TLLAAPRSLE PPQATQEMCF STATLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 496889 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175956 | 0.0 | AK175956.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH073/ALCATRAZ), complete cds, clone: RAFL22-64-A13. | |||
GenBank | AY084632 | 0.0 | AY084632.1 Arabidopsis thaliana clone 11375 mRNA, complete sequence. | |||
GenBank | BT028946 | 0.0 | BT028946.1 Arabidopsis thaliana At5g67110 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020880969.1 | 1e-150 | transcription factor ALC | ||||
Swissprot | Q9FHA2 | 1e-133 | ALC_ARATH; Transcription factor ALC | ||||
TrEMBL | D7MKT4 | 1e-148 | D7MKT4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__2705__AT5G67110.1 | 1e-149 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13982 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 1e-122 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 496889 |
Entrez Gene | 9301102 |
Publications ? help Back to Top | |||
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