PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496732
Common NameARALYDRAFT_496732
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family EIL
Protein Properties Length: 541aa    MW: 61795.4 Da    PI: 4.6328
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496732genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3452.63.2e-138384251353
             XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa....tgakksn..........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
             ++lkkrmwkd++l+++lk++k+++  +  ++    t+               ++ e++rrkkm+r+QD++LkYM+k+mevc+aqGfvYgi+pekgkpv+g+sd
  496732  38 DDLKKRMWKDRNLMCKLKQQKRDNHSSVISSpsssTS----AsssssssgivRRAEASRRKKMARSQDSVLKYMMKIMEVCKAQGFVYGIVPEKGKPVTGSSD 136
             79********************987554443333344....14455899****************************************************** PP

             XXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT.--T CS
    EIN3  90 sLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg.lsk 188
             sLr+WWke+v+fd+++p+a+s+y   +a++li+s+es +   ++s+ h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWP+G+elwwge+g ++ 
  496732 137 SLRRWWKENVQFDQTAPNAVSDYltlAAAQLISSNESLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLAPPWWPNGTELWWGEQGaAAF 236
             *************************999****9988877...99*******************************************************9999 PP

             T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX...XXXXXXXXXXXXXXXXXXXXXXX CS
    EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss...slrkqspkvtlsceqkedvegkk 288
             ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm+ake++++++vlnqee+ +++++ +        ++  ++t+ +++   +++++
  496732 237 EHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETDTWSRVLNQEEARLNRLKISDDedeDRDQELARFTCFDKEPAYKRVDQ 339
             999****************************************************************999888883323222224444444444444444555 PP

             XXX.XXXXXXXXXX.......................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
    EIN3 289 eskikhvqavktta.......................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
             es+ ++   v + +                       ++++ +krk k++e++++ s+  ++tcq+s++++s+++l+f dkn ++ +e
  496732 340 ESSLNNCFLVAQDQelrnekrvdqekslntcflvaqdQEQLGNKRKGKFAEHEAMLSN--VYTCQNSSCPSSDVSLGFVDKNLRTGHE 425
             5555544444443367777788888899999999999*******************99..7************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.3E-12538302No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-67178309IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.96E-58180305IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVEVQDLEPL SPIQDEDGDE LEEDEDEFER FGEEISYDDL KKRMWKDRNL MCKLKQQKRD  60
NHSSVISSPS SSTSASSSSS SSGIVRRAEA SRRKKMARSQ DSVLKYMMKI MEVCKAQGFV  120
YGIVPEKGKP VTGSSDSLRR WWKENVQFDQ TAPNAVSDYL TLAAAQLISS NESLDPNSYI  180
HMLHELQDTT LGSLLSALMQ HCVPPQRRFP LEKGLAPPWW PNGTELWWGE QGAAAFEHGP  240
PPYRKPHDLR KAWKVSVLAA VIKHMSPNLE RVRRLARQSK CLQDKMMAKE TDTWSRVLNQ  300
EEARLNRLKI SDDEDEDRDQ ELARFTCFDK EPAYKRVDQE SSLNNCFLVA QDQELRNEKR  360
VDQEKSLNTC FLVAQDQEQL GNKRKGKFAE HEAMLSNVYT CQNSSCPSSD VSLGFVDKNL  420
RTGHEIECLY GTQELANQSS GGGSDGFVRS MTTSDDDYSA SSKAEDTRDY HNQDGNWLDY  480
LWFERLHDLN CSEQGFEDQT STVDLNQLPD HSDSNQTMNE EDFSLWDMGC EDRDIYMSQD  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-571783081130Protein ETHYLENE INSENSITIVE 3
4zds_B4e-571783081130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap496732
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAB4938140.0AB493814.1 Arabidopsis thaliana At5g65100 mRNA for hypothetical protein, partial cds, clone: RAAt5g65100.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866649.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLD7MT780.0D7MT78_ARALL; Ethylene insensitive 3 family protein
STRINGfgenesh2_kg.8__2548__AT5G65100.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]