PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496153
Common NameARALYDRAFT_496153
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 292aa    MW: 33115 Da    PI: 4.3467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496153genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-1514104194
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
             ffk  +ps ++  + l+lp  f  ++ ++k+ + t+ +++  g++W++ l  rk++g+   +v+ +GWk+ v++ +Lk gD + F++dg+++f+l++
  496153  14 FFKPYLPSESG--DDLMLPIYFN-SC-LPKPLPETVNVRSIYGKVWKLVL--RKCGGEverFVMVNGWKKIVRDEDLKGGDLLAFEFDGSRCFNLCI 104
             67777555555..5599999997.66.5677999****************..777766677***************************999997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-198107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-179107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.32312108IPR003340B3 DNA binding domain
CDDcd100175.05E-1414105No hitNo description
SMARTSM010194.4E-1814108IPR003340B3 DNA binding domain
PfamPF023626.7E-1314105IPR003340B3 DNA binding domain
Gene3DG3DSA:1.10.601.109.5E-4108189No hitNo description
SuperFamilySSF1019361.06E-10192286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-7193285IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.12197287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNHGNYSDGS TSKFFKPYLP SESGDDLMLP IYFNSCLPKP LPETVNVRSI YGKVWKLVLR  60
KCGGEVERFV MVNGWKKIVR DEDLKGGDLL AFEFDGSRCF NLCIYERETM CKKLKRSSEQ  120
SEEIIEVGSD GEEETLASDD SDDSDNDYAV EDDDVAEDDD GLEDEDEVEA EDDDDVKAED  180
DDDNDERQYL DHHNNPYFTM TLNPKKKSQL HIPAYVIKDY DLNFPARITV MDQLGALEKA  240
IKIQKNGSIF VKGFGSVIRR NKMKMTDKMI CELKRTGSNL VHTIKVNIIS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1341111104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap496153
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938021e-130AB493802.1 Arabidopsis thaliana At5g60140 mRNA for hypothetical protein, partial cds, clone: RAAt5g60140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866372.10.0B3 domain-containing protein At5g60140
SwissprotQ9FHB01e-150Y5014_ARATH; B3 domain-containing protein At5g60140
TrEMBLD7MT690.0D7MT69_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1969__AT5G60140.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.11e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]