PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495839
Common NameARALYDRAFT_495839
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 549aa    MW: 59318 Da    PI: 7.4411
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495839genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.2e-11200256155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
             s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  495839 200 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 256
             57*******************5444.2455536655.779999**************98 PP
2AP246.31.1e-14299348355
     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  495839 299 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 348
             9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-15200266IPR016177DNA-binding domain
CDDcd000182.38E-19200266No hitNo description
PfamPF008474.0E-9200256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-12201265IPR001471AP2/ERF domain
SMARTSM003802.2E-23201270IPR001471AP2/ERF domain
PROSITE profilePS5103217.477201264IPR001471AP2/ERF domain
PRINTSPR003673.0E-6202213IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18297358IPR016177DNA-binding domain
CDDcd000181.40E-24297358No hitNo description
PROSITE profilePS5103219.203298356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18298356IPR001471AP2/ERF domain
SMARTSM003803.7E-33298362IPR001471AP2/ERF domain
PfamPF008471.5E-9299348IPR001471AP2/ERF domain
PRINTSPR003673.0E-6338358IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKNNNNKSSS SSSYDSSLSP SSSSSSHQNW LSFSLSNNNF NSSSNPNLTS STSDHHHPHP  60
SHLSLFQAFS TSPVERQDGS PGVSTGDATA VLSIYPGGPK LENFLGGGAT TTTTRSMQQV  120
QSLGGVVFSS DLQPPLHPPS AAEIYDSELK SIAASFLGNY SGGHSSEVSS VHKQQQNPLA  180
VSEASPTPKK NVESFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQGGYDKE  240
EKAARAYDLA ALKYWGPTTT TNFPISNYES ELEEMKHMTR QEFVASLRRS GFSRGASMYR  300
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDISRY  360
DVKSIASCNL PVGGLMPKPS PATAAAEKTV DLSPSDTPSP TTPSLTFNVA TTVHDHGGTF  420
YHTGIPIKPD PADHYWSSIF GFQANPKAEM RPIATFGSDL HNPSPGYAIM PVMQEGENNF  480
GGSFVGSEVY NNHSAHSSPV SAIPLSSTTN GNEGYGGNIN WINNNISDSY QTAKSNLSVL  540
QTPVFGLE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap495839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856850.0AY585685.1 Arabidopsis thaliana clone at5g57390 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871747.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ30.0AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLD7MN970.0D7MN97_ARALL; AP2/EREBP transcription factor
STRINGfgenesh2_kg.8__1655__AT5G57390.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.10.0AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]