PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495484
Common NameARALYDRAFT_495484
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 326aa    MW: 37708 Da    PI: 6.8023
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495484genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.58.7e-33621542103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++ei+ed  ++ ++sws + +sf+++d+ +f++++LpkyFkh+nf+SF+RQLn YgFkkv++++         weF+++ F+ gkk ll++ik
        495484  62 FLRKTFEIVEDTVTDPVVSWSLTRKSFIIWDSYDFSENLLPKYFKHKNFSSFLRQLNSYGFKKVDSDR---------WEFANEGFQGGKKYLLKNIK 149
                   9********************888*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++++
        495484 150 RRSKS 154
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-4758151IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-2859151IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-3260151IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.5E-2862151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-166285IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-16100112IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340101125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-16113125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTAIPNVIDI ESSSSLCQET VSPSVVETAK LDHVVSLIKE EEDDVVSLGF WKLHEIGLIT  60
PFLRKTFEIV EDTVTDPVVS WSLTRKSFII WDSYDFSENL LPKYFKHKNF SSFLRQLNSY  120
GFKKVDSDRW EFANEGFQGG KKYLLKNIKR RSKSTKCNKE ASTTTTTTTE TEVELLKEEQ  180
SPMRSEMLKL KQQQEESQHQ MVTVQEKIHG VESEQQHMLS FFAKLVKDQR FVERLLKKRK  240
MKQQRELQAA EFVKKLKLLQ DQETQNNLLD VENHLVIREF MAMAATQHNP KPDILMNNES  300
GNRRCQLNTE DLLVDGGSME AKHVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-195915517124Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap495484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652260.0AY065226.1 Arabidopsis thaliana unknown protein (At5g54070) mRNA, complete cds.
GenBankAY0965520.0AY096552.1 Arabidopsis thaliana unknown protein (At5g54070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871828.10.0heat stress transcription factor A-9
SwissprotQ9LVW20.0HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLD7MTN90.0D7MTN9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1300__AT5G54070.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-176heat shock transcription factor A9