PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 495154 | ||||||||
Common Name | ARALYDRAFT_495154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 31363.2 Da PI: 7.633 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.2e-09 | 147 | 194 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++ Lq 495154 147 SHSLAERVRREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQTLQ 194 8*************************9....555****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.5E-17 | 141 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.31E-10 | 141 | 198 | No hit | No description |
PROSITE profile | PS50888 | 15.453 | 143 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 143 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-6 | 147 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 149 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MATFSYFQNY PHSLLDPLLF PTPHPSINLT GFIDQNHLHP LPNISTVEDI SFNPFLDEYN 60 VDRPENSGLE KQANTTKTAT TRSSSCDHGS SAITTIGKKR GRKARNVSNS KEGVEGTKSK 120 KQKRGSKEEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMRTLQNLV PGCDKVTGKA 180 LMLDEIINYV QTLQNQVEFL SMKLTSISPV VYDFGSDLDG LVLRSEMGSP EVGTSFTNTM 240 PTTTSIFPSL LDNAIVQEEG EGREKFVDRS GFNNNNFCSF P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 495154 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF428350 | 0.0 | AF428350.1 Arabidopsis thaliana unknown protein mRNA, complete cds. | |||
GenBank | AY057549 | 0.0 | AY057549.1 Arabidopsis thaliana probable DNA-binding protein mRNA, complete cds. | |||
GenBank | AY087602 | 0.0 | AY087602.1 Arabidopsis thaliana clone 36971 mRNA, complete sequence. | |||
GenBank | AY113059 | 0.0 | AY113059.1 Arabidopsis thaliana At5g50917/At5g50917 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871997.1 | 0.0 | transcription factor bHLH137 isoform X1 | ||||
Swissprot | Q93W88 | 1e-180 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | D7MQU8 | 0.0 | D7MQU8_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh2_kg.8__970__AT5G50915.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8796 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-173 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 495154 |
Entrez Gene | 9301904 |
Publications ? help Back to Top | |||
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