PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 494918
Common NameARALYDRAFT_494918
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 499aa    MW: 54846.1 Da    PI: 6.337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
494918genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08309356455
             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  494918 309 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 356
             8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.51E-9303360No hitNo description
SuperFamilySSF474593.14E-16303368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-16305370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5309356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDNELFMNTE FPPPPEMATH FEPPPSSSSA MMLNWALMDP NPPQDSSFIW EKSTEQQQQQ  60
SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN IGNNNNNSGE IYGTPMSRSA  120
SCYATPMSSP PPPTNTNSQM MMNRTTPLTE FSADPGFAER ASRFSCFGSR SFNGRTNTNL  180
PINNGNNIVN NSGKLTRVSS TPALKALVSP EVAPGGEFPR KRKSVPKGKS KENPISTASP  240
SPSFSKTAEK KEEWGGKGSK SSEEKGGKRR REDEDEEEGE GEGNNNTKPP EPPKDYIHVR  300
ARRGQATDSH SLAERVRREK IGERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQVE  360
FLSMKLSSVN DTRLDFNVDA LVSKDVMIPS SNNRLHEEGL QSKSSSRHHQ QQQLNMYNSN  420
NAQLLPNISS NNMMLQSPMN SLEASTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG  480
MGVALNPNNE SQHMKIEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap494918
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0029450.0BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056370.0BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871306.10.0transcription factor bHLH78
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLD7MM360.0D7MM36_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__734__AT5G48560.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]