PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 494567
Common NameARALYDRAFT_494567
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 383aa    MW: 41724.6 Da    PI: 8.3371
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
494567genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08103127326
              S---SGGGGTS.--TTTTT-SS-SS CS
  zf-CCCH   3 telCrffartG.tCkyGdrCkFaHg 26 
               e C+ f+r G  C++Gd C FaHg
   494567 103 GEVCPEFSRHGgDCSRGDECGFAHG 127
              589*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013100128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.882101129IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5104127IPR000571Zinc finger, CCCH-type
SMARTSM003562.5137160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDVEHHKSGH ISRPTVDIPP RKLLSSAKSP SSVSSPLRNY KEQKDYCYDS DSEDPYAGDH  60
FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRFH YTGEVCPEFS RHGGDCSRGD  120
ECGFAHGVFE CWLHPSRYRT EACKDGKHCK RKVCFFAHSP RQLRVLPPSP GNLVSGCGGS  180
PLSSPASVLS SKNNRCCLFC SHSPTSTLLG LSISPSSSPP LSPADKAAAF SRLSRRRTAV  240
LNELISSLDS FSLTEALAAS SSSPVTMPTS TAAMIASSSL SNHLHHRLPP WLDVGDRDLQ  300
LQQSSPPQFA LSLSSTPSNL HGQLQPPPSS FFSDEFTPRG GQLSDFTAAA AAAAAAKARD  360
KNSYEVGSSG DLDLGWVNDL LT*
Cis-element ? help Back to Top
SourceLink
PlantRegMap494567
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114750.0AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2.
GenBankAY0349160.0AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankAY1425420.0AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871649.10.0zinc finger CCCH domain-containing protein 61 isoform X1
SwissprotQ9FKW20.0C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLD7MMK20.0D7MMK2_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.8__383__AT5G44260.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-171C3H family protein