PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 494048
Common NameARALYDRAFT_494048
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family STAT
Protein Properties Length: 638aa    MW: 72210.8 Da    PI: 4.9328
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
494048genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT196.23.1e-612213381117
    STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk.ypfleavs 102
             ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++d+eapLL+sy+Gvefs+ed+p++ll+G+asfklk+sqLssk+d+rLf++kfeip++k+ ypfle+v+
  494048 221 LDVVLTNAIGQPVHKDVKVVASLLYADSGMPVEKMSDSEAPLLVSYEGVEFSAEDKPCNLLNGCASFKLKLSQLSSKSDKRLFCVKFEIPEVKAyYPFLETVT 323
             8********************************************************************************************988******* PP

    STAT 103 kpirCisrsrntrss 117
             ++irCisr++++ ss
  494048 324 NQIRCISRNHDSLSS 338
             *********997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2001.9E-523145IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133851.0E-625147No hitNo description
SuperFamilySSF498996.65E-927166IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103386.49E-67536638No hitNo description
Gene3DG3DSA:3.30.505.101.9E-8544603IPR000980SH2 domain
SuperFamilySSF555501.46E-12544632IPR000980SH2 domain
PROSITE profilePS5000110.671547638IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MAGDCAIDTE KYSLLEDFNV DVEVENKAFE TFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLTL LHNEAPDPVN ISSWTEVPNV STTAEFPLQK WVHVGCEVSR  120
NYMRLYICGE IVGEQVLTSL MTNSTNSDCA RKISLFSVGG DGYSVQGFIH CAEVLPSNVP  180
ANYHYTKDPP LWLSVDKPST SGIGLDKDGV WIIVSGTFCS LDVVLTNAIG QPVHKDVKVV  240
ASLLYADSGM PVEKMSDSEA PLLVSYEGVE FSAEDKPCNL LNGCASFKLK LSQLSSKSDK  300
RLFCVKFEIP EVKAYYPFLE TVTNQIRCIS RNHDSLSSMK RIRLGEEKVS ESEIENGNGT  360
SMEWRPQNHE EDNSSTDSEN TEIRDSTAFR RYTISDSIIF KYCLGNLTER ALLLKEITNN  420
SSDEEVSEFV DQVSLYSGCF HHSYQIKMAR QLIAEGTNAW NLISRNYQHV HWDNVVIEIE  480
EHFMRIAKCS SRSLTHQDFD LLRRICGCYE YITQENFEKM WCWLFPVASA ISRGLINGMW  540
RSASPKWIEG FVTKEEAERS LQNQVAGTFI LRFPTSRSWP HPDAGSLVVT YVGHDLVIHH  600
RLLTIDHICD SSERYTDAKP LQDMLLAEPE LSRLGRVI
Cis-element ? help Back to Top
SourceLink
PlantRegMap494048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872922.10.0uncharacterized protein LOC9306855
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLD7MJN20.0D7MJN2_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.7__3481__AT1G17040.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]