PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 493975 | ||||||||
Common Name | ARALYDRAFT_493975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 27764.2 Da PI: 4.7 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.7 | 2.7e-15 | 124 | 214 | 2 | 83 |
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 +k+l++sdv k +rl+l+k+ ++e ++++ ++++++++ ++g +++++k+ ++++++ vlt+GWk+Fv + gL + Df++ 493975 124 KKQLMSSDVDKDqCRLMLSKEQVKEKmlpfleeSEDPVKGVDVSVYGPDGavQKMKFKI--WNGDKTPVLTSGWKQFVADYGLVmTSDFIIVW 214 699*******998************9*****9977889************666666666..**********************9899998754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.7E-11 | 123 | 228 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.84E-17 | 123 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-15 | 123 | 217 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-17 | 124 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.3E-8 | 125 | 215 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MATSTGETTS LTHKEVNVAA ESPEEEDTDD EEDIDDEDDT DDEVASTPLL QISQSRQKQS 60 RKREEKSDKN QPKRVKKHNI MKINIDDFSE ETLRSIEVWY KDELDPQDIF GDNEVTKQFS 120 KPIKKQLMSS DVDKDQCRLM LSKEQVKEKM LPFLEESEDP VKGVDVSVYG PDGAVQKMKF 180 KIWNGDKTPV LTSGWKQFVA DYGLVMTSDF IIVWMFRHIK TRNICFAIAN NSFPLKKKSS 240 R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 493975 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC027665 | 0.0 | AC027665.4 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence. | |||
GenBank | AC069251 | 0.0 | AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874170.1 | 1e-161 | putative B3 domain-containing protein At4g03170, partial | ||||
Swissprot | Q9ZR14 | 1e-115 | Y4317_ARATH; Putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | D7MJB9 | 1e-176 | D7MJB9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.7__3408__AT4G03170.1 | 1e-177 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 1e-106 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 493975 |
Entrez Gene | 9304745 |
Publications ? help Back to Top | |||
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