PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 493100 | ||||||||
Common Name | ARALYDRAFT_493100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 463aa MW: 51704.6 Da PI: 4.5414 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.1 | 1.1e-36 | 38 | 130 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed++++ ++sws ++nsf+v+d+ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i 493100 38 FLSKTYDMVEDPATNAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTIS 125 9********************999*****************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ 493100 126 RRKSA 130 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.9E-40 | 31 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.9E-63 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-35 | 35 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-32 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-20 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-20 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MDGVTGGGTN ISEAVTAPPP RNPHPATLLS ANSLPPPFLS KTYDMVEDPA TNAIVSWSPT 60 NNSFIVWDPP EFSRDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL 120 LKTISRRKSA QGHGSSSNPQ SQQLSQGQSS MAALSSCVEV GKFGLEEEVE QLKRDKNVLM 180 QELVKLRQQQ QTTDSKLQVM VKHLQAMEQR QQQIMSFLAK AVRNPTFLSQ FIQTQTDSNM 240 HVTEANKKRR LREDTTDAAT AENYSRSSDA SDGQIVKYQP LRNDSVMWNM MKTDDKYPFL 300 DGFSSPNRVS GVTLQEVLPT TSEQSQAYAP VPSGQPLSYL PSTSTSLLDT VMPEISQMPQ 360 LTRESINDFP TENYMDTETN APDTFISPSP FLDGGSVPIQ LDGIPEDPEI DELMSNFEFL 420 EEYPPESPVL GDATTVENSN NTNGRHMDKF IEELGLLTPE TE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-28 | 36 | 127 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 6e-28 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-28 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-28 | 36 | 127 | 27 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 493100 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229347 | 0.0 | AK229347.1 Arabidopsis thaliana mRNA for heat shock transcription factor HSF1, partial cds, clone: RAFL16-59-L13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020873200.1 | 0.0 | heat stress transcription factor A-1a | ||||
Swissprot | P41151 | 0.0 | HFA1A_ARATH; Heat stress transcription factor A-1a | ||||
TrEMBL | D7M9G0 | 0.0 | D7M9G0_ARALL; Heat shock factor | ||||
STRING | fgenesh2_kg.7__2533__AT4G17750.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15101 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 0.0 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 493100 |
Entrez Gene | 9306159 |
Publications ? help Back to Top | |||
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