PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

492747

Common Name

ARALYDRAFT_492747

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 297aa MW: 33530 Da PI: 4.6701

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
492747	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.6	3.3e-06	187	225	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L A+eYIk Lq 492747 187 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFLQ 225 77788899******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.639	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-10	185	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.70E-6	185	226	No hit	No description
SMART	SM00353	0.0038	186	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-9	189	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MTEEFDTTGV CNGTWWSSSN GMFSGCSLPR SAEIVVDLGG FEWQNIDTLD AKTYNENYLD 60 TSTFLGNTNL DTTSQIYVSS QSNIHEEERY NQINSFLEGL FDSIPDCPKP ELFESFHFFD 120 DVFSNESRMI SVFDHDKPKD DMQASKSLIT CKRASEKTEE HEDIESSQPL KRPRLETPSH 180 FPSFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHDAIEY IKFLQEHITE KVSSSPHLNS 240 KGSGEQKQWS DKSSNNTHNQ DCSPRLDLPS RGLCLMPISS TFSTPPQHLD ASSFWN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	492747

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065362	0.0	AY065362.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.
GenBank	AY122937	0.0	AY122937.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872906.1	0.0	transcription factor bHLH103
Swissprot	Q8VZ22	0.0	BH103_ARATH; Transcription factor bHLH103
TrEMBL	D7MEU8	0.0	D7MEU8_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.7__2180__AT4G21340.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14712	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	492747
Entrez Gene	9303927

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743]