PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

492714

Common Name

ARALYDRAFT_492714

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LSD

Protein Properties

Length: 151aa MW: 16610.8 Da PI: 5.8005

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
492714	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43	7.6e-14	62	86	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsY rG+++V+C++C+tV 492714 62 CGSCRRLLSYLRGSKHVKCSSCQTV 86 ************************9 PP
2	zf-LSD1	45.8	1e-14	100	124	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C+ lL+YP+GApsVRC++C+ + 492714 100 CNNCKLLLMYPYGAPSVRCSSCNSI 124 **********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.7E-18	59	89	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-10	62	86	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.3E-11	97	125	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.3E-12	100	124	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MEEIQTQKKE EQKHRENEEE EEEGPPPGWE SAVLAPPIAT VTAAVNPNPT TVEIPEKAQM 60 ICGSCRRLLS YLRGSKHVKC SSCQTVNLVL EANQVGQVNC NNCKLLLMYP YGAPSVRCSS 120 CNSITDISEN NKRPPWSEQQ GPLKSLSSIR *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	492714

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT011760	0.0	BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
GenBank	BT012384	0.0	BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869877.1	1e-106	protein LOL2
Swissprot	O65426	7e-88	LOL2_ARATH; Protein LOL2
TrEMBL	D7MER7	1e-105	D7MER7_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.7__2147__AT4G21610.1	1e-105	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13611	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	8e-88	lsd one like 2

Link Out ? help Back to Top
Phytozome	492714
Entrez Gene	9305948