PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491407
Common NameARALYDRAFT_491407
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 310aa    MW: 34452.3 Da    PI: 4.9289
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491407genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17200234135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  491407 200 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 234
             99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-1101290IPR016679Transcription factor, GATA, plant
SMARTSM004011.7E-17194244IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.242194230IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-15196258No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14197232IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.60E-14199246No hitNo description
PROSITE patternPS003440200225IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15200234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MERLTSELFL VAGNTDSFVV DDLLDFSNDD GEIDDGFDTL PDSSALSTGT LTDSSNSSSL  60
FTDGTGFSDL CVPRDDIAEL EWLSNFVEES FSGEVQDKLH LLSGLKNPQT TGSTLTHLIK  120
PEPEPDFDQF IDIDESNVAV PAKARSKRSR SAASTWASRL LSLADSNETN PKKKQRRVKE  180
QDFAADMDVD CGETGGGRRC LHCATEKTPQ WRTGPMGPKT LCNACGVRYK SGRLVPEYRP  240
ASSPTFVMAR HSNSHRKVME LRRQKEMRDE HLLSQLRCEN LLMDIRSNGE DLVMHNNNNH  300
VAPDFRHLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176PKKKQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap491407
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171690.0AK117169.1 Arabidopsis thaliana At4g32890 mRNA for unknown protein, complete cds, clone: RAFL16-71-E16.
GenBankBT0083420.0BT008342.1 Arabidopsis thaliana At4g32890 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872057.10.0GATA transcription factor 9
SwissprotO826320.0GATA9_ARATH; GATA transcription factor 9
TrEMBLD7M9N00.0D7M9N0_ARALL; GATA transcription factor
STRINGfgenesh2_kg.7__840__AT4G32890.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.10.0GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]