PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491291
Common NameARALYDRAFT_491291
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 352aa    MW: 38542.2 Da    PI: 4.6635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491291genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102813211055
             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  491291 281 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 321
             9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-14273337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12276330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.81E-12280325No hitNo description
PfamPF000101.4E-7281321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEAMGEWSTN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGATGGDHHQ GLYWNLGSHH  60
NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPAAEENQ NGTMDFGMED VTINTNSYLV  120
GEETSECDVE KYTSGKTLMP LETVVENQDD EESLLQSEIS VTTTKSLTGS KKRSRATSND  180
KNKRARVNKR SQKNIEMSGD NNGGEEEEGE KLKKRKNGAM MSRQNSSTTF CTEEESNCAD  240
QDGGGEDSSS KEDDASKALN LNGKTRASRG AATDPQSLYA RKRRERINER LRILQNLVPN  300
GTKVDISTML EEAVHYVKFL QLQIKLLSSD DLWMYAPIAF NGMDIGLSSP R*
Cis-element ? help Back to Top
SourceLink
PlantRegMap491291
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886160.0AF488616.1 Arabidopsis thaliana clone bHLH085 putative bHLH transcription factor mRNA, complete cds.
GenBankAK2281100.0AK228110.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-58-P18.
GenBankBT0031370.0BT003137.1 Arabidopsis thaliana At4g33880 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875027.10.0transcription factor bHLH85
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLD7MGE40.0D7MGE4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__724__AT4G33880.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.10.0ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]