PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

491027

Common Name

ARALYDRAFT_491027

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 267aa MW: 29656.4 Da PI: 8.2192

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
491027	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.3e-05	30	74	5	53
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + erE+ Rd++++ f eL + l ++ +K +K+++L+ +++ +k+ 491027 30 KAEREKLHRDKLKEQFLELGKALDPN----RPKSDKVSVLTDTIQMLKD 74 589******************997....79**********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-11	24	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.55	25	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-9	30	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0051	31	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MAVSCLSIVS SNYRAEMVVE VKKEAVCSRK AEREKLHRDK LKEQFLELGK ALDPNRPKSD 60 KVSVLTDTIQ MLKDVMNQVD RLKAEYATLS QASRELIQEK SELREEKATL KSDIEILNAQ 120 YQHRIRNMVP WIPHYTYPIP LVAITQGQSS FSPYSASVNP LIRQQASVQQ HSSSSDASIK 180 QDFKIKPLDL DLMRNSNHSG QGNDHKDDVG LELELKIHAS SLAQQDVSGK EKKGSLTSTA 240 SSSNNYSSSQ AVQDSSPGTL NDILKS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	491027

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY090362	0.0	AY090362.1 Arabidopsis thaliana AT4g36060/T19K4_190 mRNA, complete cds.
GenBank	BT000535	0.0	BT000535.1 Arabidopsis thaliana putative Myc-type transcription factor (At4g36060/T19K4_190) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020874034.1	1e-179	transcription factor bHLH11 isoform X1
Swissprot	Q8W2F2	1e-154	BH011_ARATH; Transcription factor bHLH11
TrEMBL	D7MBQ0	0.0	D7MBQ0_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.7__460__AT4G36060.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.2	1e-137	bHLH family protein

Link Out ? help Back to Top
Phytozome	491027
Entrez Gene	9303110

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]