PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491007
Common NameARALYDRAFT_491007
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 244aa    MW: 27365.7 Da    PI: 6.5082
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491007genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18171205135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             Cs+Cg+ +Tp+WR gp g ktLCnaCG+++++ +l
  491007 171 CSHCGVQETPQWRMGPLGAKTLCNACGVRFKSGRL 205
             *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-901241IPR016679Transcription factor, GATA, plant
SuperFamilySSF577168.08E-14164227No hitNo description
PROSITE profilePS5011411.583165201IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-14165219IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.0E-14169203IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.41E-14171212No hitNo description
PfamPF003201.7E-16171205IPR000679Zinc finger, GATA-type
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MECVELEAFL GDFSVDDLLD LSNADTAFVR EESSSSQREE GEQEREKAKS FSDHSTRLSP  60
LEELLSFHGD VPVGDLEDLE WLSNFVEDSF SESHLSSDFP VTPVASVEVQ RQCVPVKPRS  120
KRRRINGRIW SLESPSRLLS TAAAKEKKRW RQKAEASCGG EVQQQQPRRC CSHCGVQETP  180
QWRMGPLGAK TLCNACGVRF KSGRLLPEYR PACSPTFTTE IHSNSHRKVL ELRLMKTADP  240
GRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap491007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0724340.0AY072434.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds.
GenBankAY1147200.0AY114720.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875620.11e-179GATA transcription factor 7
SwissprotO655151e-148GATA7_ARATH; GATA transcription factor 7
TrEMBLD7MBN21e-177D7MBN2_ARALL; GATA transcription factor
STRINGfgenesh2_kg.7__440__AT4G36240.11e-178(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-139GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]