PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490032
Common NameARALYDRAFT_490032
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 366aa    MW: 42066 Da    PI: 8.7661
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490032genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013115138123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              y C+ C+++F +++ L +H +  H
   490032 115 YFCGVCDRRFYTNEKLINHFKQiH 138
              78*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.9E-658115IPR029060PIN domain-like
SuperFamilySSF576677.21E-5114140No hitNo description
PROSITE profilePS5015710.866115143IPR007087Zinc finger, C2H2
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
CDDcd061672.08E-13181267No hitNo description
PfamPF019361.9E-7186268IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.9E-6200270IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MFSRFVLRIW KPKTQFTSLN SIKGFSFSSI NPKPKIRVGV WWDLDNKPPA SFPPYDAAVK  60
LRTAASSFGS VKLMMAYANR HAFSYVPLEV REQRKDRKLL NQLENKGLVK PPEPYFCGVC  120
DRRFYTNEKL INHFKQIHET ENQKRMRQIE SSKGHQRVRL VAKYSMKIEK YKRAARNILT  180
PKEGYGLADE LKRAGFWVKM VSDKPEAADK ALKEHLVDMM DKREVECVVL VSDDSDYAGI  240
LWEAKERCLR TVVIGDSNEG ALKRVADVAY SWKEVVMGKA KKEVEKVVGK WNDRDVLKKL  300
EWSYDPALEK ERGGSCGVWD YEFDCDDDDD EIANGREVES VEIGDGGDWW KIDNEDSVGS  360
SRPCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap490032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189360.0AK118936.1 Arabidopsis thaliana At4g12240 mRNA for unknown protein, complete cds, clone: RAFL21-27-H22.
GenBankAL0803180.0AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankBT0054090.0BT005409.1 Arabidopsis thaliana clone U51152 unknown protein (At4g12240) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877699.10.0uncharacterized protein LOC9308716
TrEMBLD7M0Z20.0D7M0Z2_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.6__3166__AT4G12240.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein