PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489952
Common NameARALYDRAFT_489952
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 282aa    MW: 30643.2 Da    PI: 4.7441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489952genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-2085134255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             +++GVr+++ +g+W+AeIrdps    r  r++lg+f+taeeAa  +++a+ +l+g
  489952  85 KFRGVRQRP-WGKWAAEIRDPS----RrVRVWLGTFDTAEEAAIVYDNAAIQLRG 134
             89*******.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3084142IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2285142IPR016177DNA-binding domain
CDDcd000183.28E-3285141No hitNo description
PROSITE profilePS5103223.6385142IPR001471AP2/ERF domain
SMARTSM003805.6E-3985148IPR001471AP2/ERF domain
PfamPF008471.0E-1285134IPR001471AP2/ERF domain
PRINTSPR003671.1E-108697IPR001471AP2/ERF domain
PRINTSPR003671.1E-10108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
METAKKVSLP RILRISVTDP YATDSSSDEE EEDGFEAITR KRRRVKKYVN EVVLESVSDK  60
GKPMKKKRKK TVATAPVVVT AAARKFRGVR QRPWGKWAAE IRDPSRRVRV WLGTFDTAEE  120
AAIVYDNAAI QLRGPNALLN FSPPPVTENG EEEASTEVEE TSGSISGGGG CLHSPVSVLH  180
SPFSGESTAK IAVKEEVSGV STAEIVVKEE PSFNVPDFSA PLFSDDDVFG FPTSMSDCFG  240
GDLFGDNLFA DMSFGSGFGF GSGFSSWHVE DHFQDIGDLF GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2184141159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2181151170ATERF1
3gcc_A1e-2181151170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943RKRRR
23946RKRRRVKK
34044KRRRV
46569KKRKK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap489952
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0498760.0AL049876.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project).
GenBankAL1615310.0AL161531.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31.
GenBankAY5608490.0AY560849.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g11140) mRNA, complete cds.
GenBankBT0251760.0BT025176.1 Arabidopsis thaliana At4g11140 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF2P30.0AF080120.1 Arabidopsis thaliana BAC F2P3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876274.11e-155ethylene-responsive transcription factor CRF1
SwissprotO825031e-135CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLD7LYX20.0D7LYX2_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__3086__AT4G11140.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-114cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]