PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

489790

Common Name

ARALYDRAFT_489790

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 264aa MW: 28619.7 Da PI: 4.6827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
489790	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	198	243	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq 489790 198 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKVLQ 243 689*******************7....688*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.557	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-16	195	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.44E-12	196	247	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-16	197	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-10	198	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-12	198	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MQSTSVGSSG GGDDGGGGRG GGGGGLSRSG LSRIRSAPAT WLEALLEEDE EESLKPNLGL 60 TDLLTGNSND LPTSRSSFEF PIPVEQGLYQ QGGFHRQNST PADFLSGSDG FIQSFGIPAN 120 YDYLSGNIDV SPGSKRSREM EALFSSPEFT SQMKGEQSSG QVPAGVSGMT DMNMENLMED 180 SVAFRVRAKR GCATHPRSIA ERVRRTRISD RIRKLQELVP NMDKQTNTAD MLEEAVEYVK 240 VLQRQIQELT EEQKRCTCIP KEE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	24	GGRGGGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	489790

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK230384	0.0	AK230384.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL24-31-D13.
GenBank	BT010423	0.0	BT010423.1 Arabidopsis thaliana At4g09180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872439.1	0.0	transcription factor bHLH81
Swissprot	Q9M0R0	1e-157	BH081_ARATH; Transcription factor bHLH81
TrEMBL	D7LX86	0.0	D7LX86_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.6__2924__AT4G09180.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5104	25	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09180.1	1e-148	bHLH family protein

Link Out ? help Back to Top
Phytozome	489790
Entrez Gene	9310632

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]