PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 489614 | ||||||||
Common Name | ARALYDRAFT_489614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24441.8 Da PI: 9.655 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.9e-20 | 23 | 71 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++++ ++++ +s R ++++KKA+ELS+LCd+ev+vi+++ +g+l ++++ 489614 23 SSSTAKKTTNLSMREETMFKKAFELSTLCDIEVCVIYYGRDGELiKTWP 71 6788899999********************************9856886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-13 | 2 | 72 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.95E-21 | 16 | 98 | No hit | No description |
PROSITE profile | PS50066 | 10.75 | 25 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-15 | 26 | 107 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-13 | 26 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSTKKKTKLS LRNQTCFKKS SLSSSTAKKT TNLSMREETM FKKAFELSTL CDIEVCVIYY 60 GRDGELIKTW PEDQSKVRDM AERFTKLNDR ERRKKSTNLS LLLRKKILDD NKLSEKVLEM 120 KDSLESGIRV LQDKLKLLQP ENQIELGQSR VVSSTTNPLS SPSLIEDHHQ QQSPLMSNTE 180 QELSTSSLSQ HQSKFSVFLY NHDNGSFCQL PNS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 489614 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493763 | 0.0 | AB493763.1 Arabidopsis thaliana At5g27580 gene for hypothetical protein, partial cds, clone: RAAt5g27580. | |||
GenBank | AC007478 | 0.0 | AC007478.1 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM, complete sequence. | |||
GenBank | AY141226 | 0.0 | AY141226.1 Arabidopsis thaliana MADS-box protein AGL89 mRNA, complete cds. | |||
GenBank | BT025291 | 0.0 | BT025291.1 Arabidopsis thaliana At5g27580 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ446991 | 0.0 | DQ446991.1 Arabidopsis thaliana clone pENTR221-At5g27580 MADS-box family protein (At5g27580) mRNA, complete cds. | |||
GenBank | DQ653312 | 0.0 | DQ653312.1 Arabidopsis thaliana clone 0000012275_0000008899 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002874407.2 | 1e-153 | agamous-like MADS-box protein AGL53 | ||||
Swissprot | Q7X9H9 | 1e-110 | AGL93_ARATH; Agamous-like MADS-box protein AGL93 | ||||
TrEMBL | D7M699 | 1e-153 | D7M699_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.6__2748__AT5G27944.1 | 1e-153 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27580.1 | 1e-105 | AGAMOUS-like 89 |
Link Out ? help Back to Top | |
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Phytozome | 489614 |
Entrez Gene | 9308359 |
Publications ? help Back to Top | |||
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