PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488102
Common NameARALYDRAFT_488102
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 707aa    MW: 77582.1 Da    PI: 7.1096
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488102genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-06302322526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +C++f + G Ck Gd C +aHg
   488102 302 PCPDFKK-GSCKQGDMCEYAHG 322
              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.207.4E-1839184IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-1642176IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1883113IPR002110Ankyrin repeat
PROSITE profilePS5029716.25583176IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-1083152IPR020683Ankyrin repeat-containing domain
CDDcd002043.00E-1485161No hitNo description
SMARTSM002482.7E-5118150IPR002110Ankyrin repeat
PROSITE profilePS5008811.755118153IPR002110Ankyrin repeat
SMARTSM003561.2E-4297323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915302324IPR000571Zinc finger, CCCH-type
SMARTSM0035682332355IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.493332356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MCGLAKKVDT DNTLTSLSDQ ENESLAKSMN DVAEWEHSFS ALLEFAADND VDGFKRQLSL  60
VSCINQMGLW YRRQRFVRRM VVEQRTPLMV ASIYGSLDVV KFILSFPEAE LNLSCGPDKS  120
TALHCAASGA SVNALDVVKL LLSAGADPNI PDAHGNRPVD VLVVSPHAPG LRTILEEILK  180
KDEIISEDLH ASSSSLGSSF RSLSSSPDNG SSLLSLDSVS SPTKPNGTDV TFASEKKEYP  240
IDPSLPDIKS GIYSTDEFRM FSFKIRPCSR AYSHDWTECP FAHPGENARR RDPRKFHYTC  300
VPCPDFKKGS CKQGDMCEYA HGVFECWLHP AQYRTRLCKD GIGCNRRVCF FAHANEELRP  360
LYPSTGSGLP SPRASSAVSA STMDMASVLN MLPGSPSAAQ HSFTPPISPS GNGSMPHSSM  420
GWAQQNIPAL NLPGSNIQLS RLRSSLNARD IPSEQLSMLH EFEMQRQLAG DMHSPRFMNH  480
SARPKTLTPS NLEELFSAEV ASPRFSDQLA VSSVLSPSHK SALLNQLQNN KQSMLSPIKT  540
NLMSSPKNVE QHSLLQQASS PRAGEPISPM NARMKQQLHS RSLSSRDFGS SLPRDLMPTD  600
SGSPLSPWSS WDQTHGSKVD WSVQSDELGR LRKSHSLANN PNREADVSWA QQMLKDSASP  660
RNGNRVVNMN GARPLTQGGS SVNPHHSDTR ESDILDAWLE QLQLDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap488102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0997610.0AY099761.1 Arabidopsis thaliana zinc finger transcription factor-like protein (At5g12850) mRNA, complete cds.
GenBankAY1288910.0AY128891.1 Arabidopsis thaliana zinc finger transcription factor-like protein (At5g12850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878604.10.0zinc finger CCCH domain-containing protein 56
RefseqXP_020878605.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLD7M5350.0D7M535_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__1236__AT5G12850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain