PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487890
Common NameARALYDRAFT_487890
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 315aa    MW: 35481.1 Da    PI: 5.4425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487890genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12152195654
             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
              ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A++Y+k+L
  487890 152 LMAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDAIDYMKEL 195
             589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.663146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15153208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-5153195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEMELTRSTK QESNNLDVIN GGFTAVDQFV PNDWNFDYLC FNNLLQEDDN IDHPSSSLMN  60
LISQPPPLLH QPPQPSSPPY SLPLSSAFDY PFLEDIKDSS LSHPPFIFPT SQENNINNYS  120
PSMEESKSLM NYGETNKKKS NKKLEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKITKMD  180
RTSILGDAID YMKELLDKIN KLQDAEQKFG SNSHLNNLIT NKSMVRNSLK FEVDQREVDT  240
HLDICCPTKP GLVLSTVSTL ENLGLEIQQC VISCFSDFSL QASCFEVGGQ RDMVTSADTK  300
QALIRNAGYG GRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136158KKKSNKKLEGQPSKNLMAERRRR
2154161ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap487890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885940.0AF488594.1 Arabidopsis thaliana clone bHLH061 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876742.10.0transcription factor bHLH61
SwissprotQ9LXA91e-177BH061_ARATH; Transcription factor bHLH61
TrEMBLD7M2Y40.0D7M2Y4_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.6__1024__AT5G10570.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-172bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]