PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 487639 | ||||||||
Common Name | ARALYDRAFT_487639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 242aa MW: 27128.3 Da PI: 7.7996 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91 | 2.6e-28 | 31 | 109 | 2 | 66 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 g+kdrhsk++T +g+RdRR+Rls+ +a++++dLq++LG+ ++sk i+WLl+ ak ++ l+ + + 487639 31 FGGKDRHSKVCTVRGLRDRRIRLSVMTAIQLYDLQERLGLSQPSKVIDWLLEVAKNDVDLLPPLqfppgfpqlnpnltG 109 689************************************************************9444444444444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-26 | 33 | 152 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.225 | 33 | 91 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGIKQEDQKS SLSLLKQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR IRLSVMTAIQ 60 LYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF PQLNPNLTGL GESFPGVFDL 120 GRTQRETLDL EKSKWVNLDH GFDHSDDLHF SNSIQSNKLS FPSNTSSSSS YHYNLGHLQQ 180 SLLDQSGNVT IAFSNNYNNN NLNPPEAETM SSLFPTRYPS FLGGGQLQLF SSTSSQPDHI 240 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-17 | 38 | 92 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-17 | 38 | 92 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00497 | DAP | Transfer from AT5G08070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 487639 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL357612 | 0.0 | AL357612.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project). | |||
GenBank | BT029995 | 0.0 | BT029995.1 Arabidopsis thaliana At5g08070 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871306.2 | 1e-177 | transcription factor TCP17 | ||||
Swissprot | Q9LEZ9 | 1e-155 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | D7M182 | 1e-175 | D7M182_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__773__AT5G08070.1 | 1e-176 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 1e-131 | TCP domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | 487639 |
Entrez Gene | 9307376 |
Publications ? help Back to Top | |||
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