PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

487498

Common Name

ARALYDRAFT_487498

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 419aa MW: 46688.7 Da PI: 7.0611

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
487498	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.6e-11	118	146	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le 487498 118 KTLRRLAQNREAARKSRLRKKAYVQQLES 146 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-9	109	162	No hit	No description
SMART	SM00338	2.9E-6	114	203	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	116	160	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.77E-7	118	159	No hit	No description
Pfam	PF00170	8.5E-8	118	148	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.29E-22	118	170	No hit	No description
PROSITE pattern	PS00036	0	121	136	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-30	212	286	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MQGHHQNHHQ QHLSSSSATS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPPLP 60 HHHHTTQNLA MRPPSTLNIF PSQPMHIEPP PSSTHNKEGN RKGLASSDHD IPKSSDPKTL 120 RRLAQNREAA RKSRLRKKAY VQQLESCRIK LTQLEQEIQR ARSQGVFFGG SLIGGDQQQG 180 GLPIGPGNIS SAEAAVFDME YARWLEEQQR LLNELRVATQ EHLAENELRM FVDTCLAHYD 240 HLINLKAMVA KTDVFHLISG AWKTPAERCF LWMGGFRPSE IIKVIVNQIE PLTEQQIVGI 300 CGLQQSTQEA EEALSQGLEA LNQSLSDSIV SDSLPPASAP LPPHLSNFMS HMSLALNKLS 360 ALEGFVLQAD NLRHQTIHRL NQLLTTRQEA RCLLAVAEYF HRLQALSSLW LARPRQDG*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MQGHHQNHHQ QHLSSSSATS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPPLP  60
HHHHTTQNLA MRPPSTLNIF PSQPMHIEPP PSSTHNKEGN RKGLASSDHD IPKSSDPKTL  120
RRLAQNREAA RKSRLRKKAY VQQLESCRIK LTQLEQEIQR ARSQGVFFGG SLIGGDQQQG  180
GLPIGPGNIS SAEAAVFDME YARWLEEQQR LLNELRVATQ EHLAENELRM FVDTCLAHYD  240
HLINLKAMVA KTDVFHLISG AWKTPAERCF LWMGGFRPSE IIKVIVNQIE PLTEQQIVGI  300
CGLQQSTQEA EEALSQGLEA LNQSLSDSIV SDSLPPASAP LPPHLSNFMS HMSLALNKLS  360
ALEGFVLQAD NLRHQTIHRL NQLLTTRQEA RCLLAVAEYF HRLQALSSLW LARPRQDG*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	487498

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314787	0.0	AJ314787.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP65 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001078538.1	0.0	bZIP transcription factor family protein
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	D7LZU5	0.0	D7LZU5_ARALL; BZIP family transcription factor
STRING	fgenesh2_kg.6__632__AT5G06839.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.2	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	487498
Entrez Gene	9309350

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]