PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486946
Common NameARALYDRAFT_486946
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 899aa    MW: 99848.7 Da    PI: 8.946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486946genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-095292954
            HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
     HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
             r RR+ri ++f  L++++P  a      K++ +++Le+A++Y+k L
  486946 52 ARERRHRISERFKILQSMVPGgA------KMDTVSMLEEAIRYVKFL 92
            699*****************966......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1614392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-1248107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-104996No hitNo description
Gene3DG3DSA:4.10.280.101.1E-104996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-65392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525401.22E-12214355IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.3E-18214349IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136711.3E-11214322No hitNo description
Gene3DG3DSA:3.40.220.100.001438481No hitNo description
SuperFamilySSF529491.96E-18487629No hitNo description
PROSITE profilePS5115412.344496675IPR002589Macro domain
SMARTSM005065.0E-4508643IPR002589Macro domain
Gene3DG3DSA:3.40.220.102.3E-15508627No hitNo description
PfamPF016611.8E-6531615IPR002589Macro domain
SuperFamilySSF541977.14E-40683861IPR011146HIT-like domain
PROSITE profilePS510849.484705814IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.103.9E-13706811IPR011146HIT-like domain
PfamPF119692.6E-26708818No hitNo description
PROSITE patternPS008920787805IPR019808Histidine triad, conserved site
PfamPF162782.5E-9823876IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0090305Biological Processnucleic acid phosphodiester bond hydrolysis
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MDDFNLRGQN PNSSSATSSS SSSLHGHKSE TGNTKRSRST STLSTDPQSV AARERRHRIS  60
ERFKILQSMV PGGAKMDTVS MLEEAIRYVK FLKAQIWFHQ NMLLFLNNHE TTSSCYSPGA  120
GEFGPKLFGY DDDYAPIVET NSQGMPLTVM DSENTPWFGS AHDEQERIRH VFQTHACHTR  180
NWRNRETGSP INDSDHREKM EVKIEESEKA KQIVVLLIGP PGSCKSTFCD TVMRSSHRPW  240
SRICQDIINN GKAGTKAQCL KMATESLREG KSVFIDRCNL DREQRSEFIK LGGPGIEVHA  300
VVLELSAQVC ISRSVKRTGH EGNLQGGRAA AVVNKMLQSK ELPKVNEGFS RIMFCYNDAD  360
VENASNTYNK LGPMDNLPSG CFGEKKSDTK SQPGIMKFFK KVNALPGSSS NEAANATQND  420
NEKTRNVRVS PAKLGSADIV PTLAFPSIST ADFQFDLEKA SDIIVEKAEE FLPKLGTARL  480
VLVDLSQGSK ILSLVKAKAA QKNIDSARFF TFVGDITKLR SEGGLHCNVI ANATNWRLKP  540
GGGGVNAAIF KAAGPDLEAA TRVRANTLLP GKAAVVPLPS TCPLHNAEGI THVIHVLGPN  600
MNPNRPDNLN NDYTKGCKTL REAYTSLFEG FLSVVQDQSK LPKRSNQTAL SDSGEDIKED  660
SERNKKYKGS QDKAVTNNLE SGSLEDTRDS GKKMSKGWST WALALHSIAM HPERHENVVL  720
EFSDNIVVIN DQYPKARKHV LVLARQESLD GLEDVRKENL QLLQEMHNVG LKWVDRFQNE  780
DASLIFRLGY HSVPSMRQLH LHVISQDFDS DSLKNKKHWN SFTSSFFRDS VDVLEEVKSQ  840
GKANVASEDL LKGELRCNRC RSAHPNIPKL KSHVRNCRSQ FPDHLLQNNR LVARPVRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A1e-9344263637231Basic helix-loop-helix, putative, expressed
5lw0_B1e-9344263637231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap486946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1617460.0AL161746.2 Arabidopsis thaliana DNA chromosome 5, BAC clone T10O8 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011424.10.0LOW QUALITY PROTEIN: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.6__80__AT5G01310.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.10.0APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]