PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486528
Common NameARALYDRAFT_486528
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 241aa    MW: 26305.4 Da    PI: 8.0648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486528genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.3e-18160194135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  486528 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 194
             *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-891238IPR016679Transcription factor, GATA, plant
SMARTSM004011.0E-15154204IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.543154190IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15157218No hitNo description
Gene3DG3DSA:3.30.50.109.2E-14158192IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.91E-13159206No hitNo description
PfamPF003206.2E-16160194IPR000679Zinc finger, GATA-type
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSSPDLLRID DLLDFSNDEI FSSSTSSTVT SSAASSAGSS ENPFNFPSSA YTSPPLLTDF  60
THDLCVPSDD AAHLEWLSRF VDDSFSDFPA NPLTMTVRPE ISFTGKPRSR RSRAPAPSVA  120
GTWAPMPESE LCHSVAKPKP KKVYNAESIT ADVGGGARRC THCASEKTPQ WRTGPLGPKT  180
LCNACGVRYK SGRLVPEYRP ASSPTFVLTQ HSNSHRKVME LRRQKEQQES CVRIPPFQPQ  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap486528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3788810.0AF378881.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankAY0395320.0AY039532.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankAY0504760.0AY050476.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankY136510.0Y13651.1 Arabidopsis thaliana mRNA for GATA transcription factor 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880430.11e-152GATA transcription factor 4
SwissprotO497431e-144GATA4_ARATH; GATA transcription factor 4
TrEMBLD7LRR71e-176D7LRR7_ARALL; GATA transcription factor
STRINGfgenesh2_kg.5__2520__AT3G60530.11e-177(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-132GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]